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#bioinformatics

28 posts19 participants0 posts today
Public
naturepoker

So what are people using to visualize gfa files these days? I've been using ctlab fork of BandageNG (github.com/ctlab/BandageNG) but it looks like older BandageNG is finally getting updated too (github.com/asl/BandageNG)

Or are there better gfa graph visualization solutions out there now?

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily - ctlab/BandageNG
GitHubGitHub - ctlab/BandageNG: a Bioinformatics Application for Navigating De novo Assembly Graphs Easilya Bioinformatics Application for Navigating De novo Assembly Graphs Easily - ctlab/BandageNG
#bioinformatics
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Dave Tabb

@bitflipped
Hi, Cameron! I also enjoy C# programming, though I'm using it professionally rather than for fun. I use .NET for #bioinformatics research. My code is frequently appalling; the first versions of the software I'm writing now were crafted in Emacs but built with the .NET 4.0 command line compiler. One of my junior colleagues created some features that required that I update to the Visual Studio build system instead...

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Albert Cardona

2-year Postdoc Position: Evolution and Organization of Ant Olfactory Systems

– in Carlotta Martelli's lab at Johannes Gutenberg University Mainz, Germany.

mrtlllab.uni-mainz.de/wp-conte

"The ideal candidate should have a strong background in bioinformatics, ideally with practical or theoretical experience in single-cell transcriptomics or comparative genomics. A keen interest in neurobiology is essential. Additional skills in evolutionary biology, insect handling, and programming (preferably in Python) would be advantageous, but are not mandatory."

Position still open!

#ants#PhDJobs#postdocJob
Public
Aidan :rna:

Excited to announce our article, "EvoWeaver: large-scale prediction of gene functional associations from coevolutionary signals" was just published in Nature Communications!

We demonstrate that it's possible to infer how genes work together using only sequencing data by leveraging correlated signals of evolution. Check it out at the link below!

#genomics #bioinformatics #rstats #genetics #evolution #biology

nature.com/articles/s41467-025

NatureEvoWeaver: large-scale prediction of gene functional associations from coevolutionary signals - Nature CommunicationsDespite having structures for most proteins, we still do not know their function. Here, authors introduce EvoWeaver, a de novo method to identify genes working together using evolutionary information. EvoWeaver can help to infer functions for understudied proteins using only genomic sequences.
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