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Ankur Sinha "FranciscoD"Generated a quick plot to see usage trends for Open Source Brain v2 (<a href="https://fosstodon.org/tags/OSBv2" class="mention hashtag" rel="nofollow noopener" target="_blank">#OSBv2</a>): an integrated <a href="https://fosstodon.org/tags/research" class="mention hashtag" rel="nofollow noopener" target="_blank">#research</a> platform for <a href="https://fosstodon.org/tags/neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#neuroscience</a> that indexes multiple model and data sources (<a href="https://fosstodon.org/tags/DANDI" class="mention hashtag" rel="nofollow noopener" target="_blank">#DANDI</a>, <a href="https://fosstodon.org/tags/ModelDB" class="mention hashtag" rel="nofollow noopener" target="_blank">#ModelDB</a>, <a href="https://fosstodon.org/tags/Biomodels" class="mention hashtag" rel="nofollow noopener" target="_blank">#Biomodels</a>, <a href="https://fosstodon.org/tags/Github" class="mention hashtag" rel="nofollow noopener" target="_blank">#Github</a>) and provides compute resources on the <a href="https://fosstodon.org/tags/cloud" class="mention hashtag" rel="nofollow noopener" target="_blank">#cloud</a> in "workspaces". It also includes specialist applications: <a href="https://fosstodon.org/tags/NWBExplorer" class="mention hashtag" rel="nofollow noopener" target="_blank">#NWBExplorer</a> for working with data in the NeuroData Without Borders (<a href="https://fosstodon.org/tags/NWB" class="mention hashtag" rel="nofollow noopener" target="_blank">#NWB</a>) format; <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a>-UI for biophysically detailed <a href="https://fosstodon.org/tags/ComputationalModelling" class="mention hashtag" rel="nofollow noopener" target="_blank">#ComputationalModelling</a> and a <a href="https://fosstodon.org/tags/JupyterLab" class="mention hashtag" rel="nofollow noopener" target="_blank">#JupyterLab</a> environment.

Ankur Sinha "FranciscoD"<a href="https://fosstodon.org/tags/NeuroML" class="mention hashtag" rel="nofollow noopener" target="_blank">#NeuroML</a> supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (<a href="https://fosstodon.org/tags/pyNeuroML" class="mention hashtag" rel="nofollow noopener" target="_blank">#pyNeuroML</a>, <a href="https://fosstodon.org/tags/neuroConstruct" class="mention hashtag" rel="nofollow noopener" target="_blank">#neuroConstruct</a>, <a href="https://fosstodon.org/tags/NEURON" class="mention hashtag" rel="nofollow noopener" target="_blank">#NEURON</a>, <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a>, <a href="https://fosstodon.org/tags/PyNN" class="mention hashtag" rel="nofollow noopener" target="_blank">#PyNN</a>, <a href="https://fosstodon.org/tags/N2A" class="mention hashtag" rel="nofollow noopener" target="_blank">#N2A</a>), validating (pyNeuroML, <a href="https://fosstodon.org/tags/OMV" class="mention hashtag" rel="nofollow noopener" target="_blank">#OMV</a>, <a href="https://fosstodon.org/tags/SciUnit" class="mention hashtag" rel="nofollow noopener" target="_blank">#SciUnit</a>), visualising (pyNeuroML, <a href="https://fosstodon.org/tags/OSB" class="mention hashtag" rel="nofollow noopener" target="_blank">#OSB</a>, <a href="https://fosstodon.org/tags/NeuroML" class="mention hashtag" rel="nofollow noopener" target="_blank">#NeuroML</a>-DB), simulating (<a href="https://fosstodon.org/tags/NEURON" class="mention hashtag" rel="nofollow noopener" target="_blank">#NEURON</a>, <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a>, <a href="https://fosstodon.org/tags/Brian" class="mention hashtag" rel="nofollow noopener" target="_blank">#Brian</a>, <a href="https://fosstodon.org/tags/PyNN" class="mention hashtag" rel="nofollow noopener" target="_blank">#PyNN</a>, <a href="https://fosstodon.org/tags/NEST" class="mention hashtag" rel="nofollow noopener" target="_blank">#NEST</a>, <a href="https://fosstodon.org/tags/MOOSE" class="mention hashtag" rel="nofollow noopener" target="_blank">#MOOSE</a>, <a href="https://fosstodon.org/tags/EDEN" class="mention hashtag" rel="nofollow noopener" target="_blank">#EDEN</a>), model fitting/optimisation (<a href="https://fosstodon.org/tags/NeuroTune" class="mention hashtag" rel="nofollow noopener" target="_blank">#NeuroTune</a>, <a href="https://fosstodon.org/tags/BluePyOpt" class="mention hashtag" rel="nofollow noopener" target="_blank">#BluePyOpt</a>, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, <a href="https://fosstodon.org/tags/NeuroMorpho" class="mention hashtag" rel="nofollow noopener" target="_blank">#NeuroMorpho</a>.org). 7/x

Ankur Sinha "FranciscoD"A number of software tools are available for construction and simulation of models: <a href="https://fosstodon.org/tags/NEURON" class="mention hashtag" rel="nofollow noopener" target="_blank">#NEURON</a>, <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a>, <a href="https://fosstodon.org/tags/Brian" class="mention hashtag" rel="nofollow noopener" target="_blank">#Brian</a>, <a href="https://fosstodon.org/tags/PyNN" class="mention hashtag" rel="nofollow noopener" target="_blank">#PyNN</a>, <a href="https://fosstodon.org/tags/NEST" class="mention hashtag" rel="nofollow noopener" target="_blank">#NEST</a>, <a href="https://fosstodon.org/tags/MOOSE" class="mention hashtag" rel="nofollow noopener" target="_blank">#MOOSE</a>, <a href="https://fosstodon.org/tags/EDEN" class="mention hashtag" rel="nofollow noopener" target="_blank">#EDEN</a> etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x

INCFOur SBP Committee has endorsed 3 new standards! - SPARC Data Structure - NetPyNE - SWCWe're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻Learn more: <a href="https://www.incf.org/blog/incf-endorsement-new-standards-best-practices" rel="nofollow noopener" translate="no" target="_blank">https://www.incf.org/blog/incf-endorsement-new-standards-best-practices</a><a href="https://neuromatch.social/tags/neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#neuroscience</a> <a href="https://neuromatch.social/tags/neuroinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#neuroinformatics</a> <a href="https://neuromatch.social/tags/FAIR" class="mention hashtag" rel="nofollow noopener" target="_blank">#FAIR</a> <a href="https://neuromatch.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenScience</a> <a href="https://neuromatch.social/tags/OpenNeuro" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenNeuro</a> <a href="https://neuromatch.social/tags/SPARC" class="mention hashtag" rel="nofollow noopener" target="_blank">#SPARC</a> <a href="https://neuromatch.social/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a> <a href="https://neuromatch.social/tags/SWC" class="mention hashtag" rel="nofollow noopener" target="_blank">#SWC</a>

INCF⚠️ Last chance: Review period ends today ⚠️📢 Community review requested: NetPyNENetPyNE is an open-source <a href="https://neuromatch.social/tags/Python" class="mention hashtag" rel="nofollow noopener" target="_blank">#Python</a> package designed for the development, simulation, & analysis of biological neuronal networks 🧠Used this standard? Review it here: <a href="https://www.incf.org/commentaries/call-community-review-netpyne" rel="nofollow noopener" translate="no" target="_blank">https://www.incf.org/commentaries/call-community-review-netpyne</a><a href="https://neuromatch.social/tags/neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#neuroscience</a> <a href="https://neuromatch.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenScience</a> <a href="https://neuromatch.social/tags/OpenData" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenData</a> <a href="https://neuromatch.social/tags/FAIR" class="mention hashtag" rel="nofollow noopener" target="_blank">#FAIR</a> <a href="https://neuromatch.social/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a>

INCF📢Community review requested: NetPyNE📢NetPyNE is an open-source <a href="https://neuromatch.social/tags/Python" class="mention hashtag" rel="nofollow noopener" target="_blank">#Python</a> package designed for the development, simulation, & analysis of biological neuronal networks 🧠⚠️ The review period ends TOMORROW - Fri Feb 09!Used this standard? Review it here: <a href="https://www.incf.org/commentaries/call-community-review-netpyne" rel="nofollow noopener" translate="no" target="_blank">https://www.incf.org/commentaries/call-community-review-netpyne</a><a href="https://neuromatch.social/tags/neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#neuroscience</a> <a href="https://neuromatch.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenScience</a> <a href="https://neuromatch.social/tags/OpenData" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenData</a> <a href="https://neuromatch.social/tags/FAIR" class="mention hashtag" rel="nofollow noopener" target="_blank">#FAIR</a> <a href="https://neuromatch.social/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a>

INCF📢Community review requested: NetPyNE📢NetPyNE is an open-source <a href="https://neuromatch.social/tags/Python" class="mention hashtag" rel="nofollow noopener" target="_blank">#Python</a> package designed for the development, simulation, & analysis of biological neuronal networks 🧠⚠️ The review period ends Fri Feb 09!Used this standard? Review it here: <a href="https://www.incf.org/commentaries/call-community-review-netpyne" rel="nofollow noopener" translate="no" target="_blank">https://www.incf.org/commentaries/call-community-review-netpyne</a><a href="https://neuromatch.social/tags/neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#neuroscience</a> <a href="https://neuromatch.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenScience</a> <a href="https://neuromatch.social/tags/OpenData" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenData</a> <a href="https://neuromatch.social/tags/FAIR" class="mention hashtag" rel="nofollow noopener" target="_blank">#FAIR</a> <a href="https://neuromatch.social/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a>

INCFWe need your feedback on NetPyNE!NetPyNE is an open-source Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠Have you used this standard? What do you like? What would you change? Share your thoughts here: <a href="https://www.incf.org/commentaries/call-community-review-netpyne" rel="nofollow noopener" translate="no" target="_blank">https://www.incf.org/commentaries/call-community-review-netpyne</a><a href="https://neuromatch.social/tags/neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#neuroscience</a> <a href="https://neuromatch.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenScience</a> <a href="https://neuromatch.social/tags/OpenData" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenData</a> <a href="https://neuromatch.social/tags/FAIR" class="mention hashtag" rel="nofollow noopener" target="_blank">#FAIR</a> <a href="https://neuromatch.social/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a>

Roy Ben-ShalomExcited to share: I've been awarded the <a href="https://sfba.social/tags/Hartwell" class="mention hashtag" rel="nofollow noopener" target="_blank">#Hartwell</a> biomedical research award! We will use <a href="https://sfba.social/tags/Netpyne" class="mention hashtag" rel="nofollow noopener" target="_blank">#Netpyne</a> to simulate channelopathies (<a href="https://sfba.social/tags/SCN2A" class="mention hashtag" rel="nofollow noopener" target="_blank">#SCN2A</a>/#SCN1A) for tailored therapies. Seeking a computational post-doc to join our team, DM me for details! <a href="https://sfba.social/tags/epilepsy" class="mention hashtag" rel="nofollow noopener" target="_blank">#epilepsy</a> <a href="https://sfba.social/tags/computationalneuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#computationalneuroscience</a>

Ankur Sinha "FranciscoD"FYI folks, the Open Source Brain cluster is being upgraded and migrated, so you may experience transient issues on the <a href="https://fosstodon.org/tags/OpenSourceBrain" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenSourceBrain</a> platforms. More information on the status page here:<a href="https://status.opensourcebrain.org/" rel="nofollow noopener" target="_blank">https://status.opensourcebrain.org/</a><a href="https://fosstodon.org/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenScience</a> <a href="https://fosstodon.org/tags/Neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#Neuroscience</a> <a href="https://fosstodon.org/tags/Neuroinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Neuroinformatics</a> <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener" target="_blank">#NetPyNE</a> <a href="https://fosstodon.org/tags/NWBExplorer" class="mention hashtag" rel="nofollow noopener" target="_blank">#NWBExplorer</a>CC: <a href="https://fediscience.org/@sdurabernal" class="u-url mention" rel="nofollow noopener" target="_blank">@sdurabernal</a>

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